STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-ccm-3Uncharacterized protein. (215 aa)    
Predicted Functional Partners:
B9Z55_016162
Uncharacterized protein.
    
 
 0.996
Cni-gck-1
Protein kinase domain-containing protein.
    
 
 0.980
Cni-C49H3.6
CortBP2 domain-containing protein.
    
 
 0.977
Cni-C30A5.3
Uncharacterized protein.
   
 
 0.969
Cni-farl-11
Uncharacterized protein.
    
 
 0.953
Cni-C03B1.5
Protein kinase domain-containing protein.
    
 
 0.945
Cni-cash-1
WD_REPEATS_REGION domain-containing protein.
    
 
 0.941
Cni-let-92
Serine/threonine-protein phosphatase.
   
 
 0.929
B9Z55_016163
Uncharacterized protein.
    
 
 0.906
B9Z55_028963
Uncharacterized protein.
    
 
 0.903
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.