STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-F33A8.4Uncharacterized protein. (462 aa)    
Predicted Functional Partners:
Cni-C38D4.9
MTS domain-containing protein.
      
 0.999
Cni-F23H11.2
RRN7-type domain-containing protein.
   
  
 0.921
B9Z55_017129
Uncharacterized protein.
   
    0.918
Cni-prp-38
PRP38_assoc domain-containing protein.
   
    0.918
Cni-mrpl-2
Ribosomal_L2_C domain-containing protein.
   
    0.918
Cni-K10D2.5
Uncharacterized protein.
   
    0.918
Cni-Y75B8A.14
GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
    0.918
Cni-glrx-5
Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
   
    0.918
Cni-taf-11.3
TAFII28 domain-containing protein.
   
    0.918
Cni-mdt-29
Uncharacterized protein.
   
    0.918
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.