STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-col-84Col_cuticle_N domain-containing protein. (334 aa)    
Predicted Functional Partners:
B9Z55_001950
Uncharacterized protein.
    
 0.738
B9Z55_001949
Uncharacterized protein.
    
 0.738
B9Z55_001947
Uncharacterized protein.
    
 0.738
B9Z55_001946
Uncharacterized protein.
    
 0.738
Cni-met-2
Uncharacterized protein.
    
 0.633
Cni-col-51
Col_cuticle_N domain-containing protein.
   
  
0.608
Cni-calu-1
Uncharacterized protein.
    
 
 0.605
Cni-nud-1
CS domain-containing protein.
    
 0.568
Cni-rla-0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.561
Cni-rsp-3
Uncharacterized protein.
      
 0.560
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.