STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-Y23H5B.3DUF19 domain-containing protein. (968 aa)    
Predicted Functional Partners:
Cni-icl-1
Malate synthase; Belongs to the malate synthase family.
   
 
 0.787
Cni-sur-6
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.681
B9Z55_010440
Serine/threonine-protein kinase PLK.
    
 0.621
B9Z55_007304
Serine/threonine-protein kinase PLK.
    
 0.621
B9Z55_002330
Serine/threonine-protein kinase PLK.
    
 0.621
B9Z55_000969
Serine/threonine-protein kinase PLK.
    
 0.621
Cni-lam-1
Uncharacterized protein.
    
 0.615
B9Z55_007295
Uncharacterized protein.
    
 0.615
Cni-nipi-4
Protein kinase domain-containing protein.
    
 0.606
B9Z55_017022
Uncharacterized protein.
    
 0.606
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.