STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cni-trpa-2Uncharacterized protein. (264 aa)    
Predicted Functional Partners:
Cni-C01B7.5
PDZ domain-containing protein.
   
 0.741
Cni-magu-2
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.741
Cni-ift-81
IFT81_CH domain-containing protein.
    
 0.697
Cni-ifta-2
Uncharacterized protein.
    
 0.676
Cni-let-413
PDZ domain-containing protein.
   
 0.669
B9Z55_015170
SER_THR_PHOSPHATASE domain-containing protein.
   
 0.661
Cni-osm-6
Uncharacterized protein.
    
 0.648
Cni-osm-1
Uncharacterized protein.
    
 0.640
Cni-dyf-1
Uncharacterized protein.
    
  0.639
Cni-dyf-13
Uncharacterized protein.
    
  0.634
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.