STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001614315_01253Unannotated protein. (322 aa)    
Predicted Functional Partners:
GCA_001614315_02834
Unannotated protein.
 
 
 0.950
GCA_001614315_01006
Unannotated protein.
  
  
0.940
GCA_001614315_00751
Unannotated protein.
 
 
 0.931
GCA_001614315_00415
Unannotated protein.
  
 0.923
GCA_001614315_01112
Unannotated protein.
  
 0.613
GCA_001614315_00541
Unannotated protein.
  
 0.604
GCA_001614315_03123
Unannotated protein.
 
  
 0.556
GCA_001614315_01818
Unannotated protein.
  
 
 0.531
GCA_001614315_00391
Unannotated protein.
  
 
 0.525
GCA_001614315_01319
Unannotated protein.
     
 0.509
Your Current Organism:
Halofilum ochraceum
NCBI taxonomy Id: 1611323
Other names: CICC 23817, Ectothiorhodospiraceae bacterium XJ16, H. ochraceum, Halofilum ochraceum Xia et al. 2017, KCTC 42259, MCCC 1H00120, strain XJ16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.