STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001614315_01614Unannotated protein. (456 aa)    
Predicted Functional Partners:
GCA_001614315_01283
Unannotated protein.
  
 
   0.852
GCA_001614315_03123
Unannotated protein.
 
  
 0.787
GCA_001614315_00983
Unannotated protein.
 
  
 0.773
GCA_001614315_01611
Unannotated protein.
 
    0.744
GCA_001614315_01612
Unannotated protein.
 
    0.645
GCA_001614315_01454
Unannotated protein.
  
   
 0.643
GCA_001614315_02620
Unannotated protein.
 
   
 0.563
GCA_001614315_02698
Unannotated protein.
 
  
 0.547
GCA_001614315_00926
Unannotated protein.
 
     0.526
GCA_001614315_01273
Unannotated protein.
 
   
 0.510
Your Current Organism:
Halofilum ochraceum
NCBI taxonomy Id: 1611323
Other names: CICC 23817, Ectothiorhodospiraceae bacterium XJ16, H. ochraceum, Halofilum ochraceum Xia et al. 2017, KCTC 42259, MCCC 1H00120, strain XJ16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.