STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001614315_02988Unannotated protein. (265 aa)    
Predicted Functional Partners:
GCA_001614315_01703
Unannotated protein.
    
   0.899
GCA_001614315_02989
Unannotated protein.
 
  
 0.837
GCA_001614315_02987
Unannotated protein.
 
  
 0.754
GCA_001614315_02992
Unannotated protein.
 
   
 0.655
GCA_001614315_02990
Unannotated protein.
 
     0.654
GCA_001614315_02993
Unannotated protein.
 
   
 0.651
GCA_001614315_02991
Unannotated protein.
 
     0.631
GCA_001614315_01040
Unannotated protein.
  
 
 0.586
GCA_001614315_00675
Unannotated protein.
  
 
  0.579
GCA_001614315_02994
Unannotated protein.
 
     0.559
Your Current Organism:
Halofilum ochraceum
NCBI taxonomy Id: 1611323
Other names: CICC 23817, Ectothiorhodospiraceae bacterium XJ16, H. ochraceum, Halofilum ochraceum Xia et al. 2017, KCTC 42259, MCCC 1H00120, strain XJ16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.