STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKS50584.1HAD family hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family. (258 aa)    
Predicted Functional Partners:
AKS50585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.946
AKS50583.1
Rhodopsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.909
AKS50586.1
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
  
  
 0.889
AKS50587.1
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.861
AKS50588.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.809
AKS50589.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
AKS50590.1
Dipeptidase PepV; Divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.460
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
  
 0.433
AKS52300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.410
AKS51216.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.407
Your Current Organism:
Lactobacillus farciminis
NCBI taxonomy Id: 1612
Other names: ATCC 29644, BCRC 14043, CCUG 30671, CIP 103136, DSM 20184, KCTC 3681, L. farciminis, LMG 9200, LMG:9200, Lactobacillus sp. S215, NCIMB 11717, NRRL B-4566
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