Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AKS50870.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
AKS50871.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.884
AKS50869.1
NAD-dependent protein deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.836
AKS52242.1
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.512
AKS50868.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
AKS50717.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.498
AKS50554.1
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.457
AKS50545.1
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.447
AKS50505.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.429
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.418
AKS50855.1
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Lactobacillus farciminis
NCBI taxonomy Id: 1612
Other names: ATCC 29644, BCRC 14043, CCUG 30671, CIP 103136, DSM 20184, KCTC 3681, L. farciminis, LMG 9200, LMG:9200, Lactobacillus sp. S215, NCIMB 11717, NRRL B-4566
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