STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFZ92065.1Protein of unknown function. (160 aa)    
Predicted Functional Partners:
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.672
SFZ91917.1
Protein of unknown function.
  
     0.663
SFZ91419.1
Protein of unknown function.
 
    
0.641
SFZ96514.1
Hypothetical protein.
  
     0.593
SFZ96407.1
Protein of unknown function.
  
     0.584
SFZ96135.1
Hypothetical protein.
  
     0.565
SFZ91073.1
uroporphyrinogen-III synthase.
  
     0.513
SFZ96221.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
     0.497
SFZ94430.1
Membrane protein YfhO.
  
     0.471
SFZ91952.1
OstA-like protein.
  
     0.467
Your Current Organism:
Chryseobacterium limigenitum
NCBI taxonomy Id: 1612149
Other names: C. limigenitum, CCM 8594, CIP 110896, Chryseobacterium limigenitum Kampfer et al. 2015, Chryseobacterium sp. SUR2, LMG 28734, LMG:28734, ZIM B1019, strain SUR2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.