STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB86715.1ABC-2 type transport system ATP-binding protein. (299 aa)    
Predicted Functional Partners:
SDB86704.1
GntR family transcriptional regulator.
 
  
 0.965
SDB86725.1
ABC-2 type transport system permease protein.
 
     0.953
SDC23162.1
ABC-2 type transport system permease protein.
  
 0.822
SDC05501.1
ABC-2 type transport system permease protein.
  
 0.759
SDB86736.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.734
SDC55721.1
ABC-2 type transport system permease protein.
 
 
 0.613
SDC20509.1
ABC-2 type transport system permease protein.
  
 
 0.567
SDB86752.1
Hypothetical protein.
       0.556
SDC20549.1
ABC-2 type transport system permease protein.
  
 
 0.536
SDB86692.1
Phospholipase/carboxylesterase.
   
 
 0.526
Your Current Organism:
Pelagirhabdus alkalitolerans
NCBI taxonomy Id: 1612202
Other names: Amphibacillus sp. S5, CGMCC 1.15177, KCTC 33632, P. alkalitolerans, Pelagirhabdus alkalitolerans Sultanpuram et al. 2016, strain S5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.