STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC40834.1Putative sporulation protein YyaC. (195 aa)    
Predicted Functional Partners:
gpr
GPR endopeptidase Aspartic peptidase. MEROPS family A25; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.787
SDC40869.1
Uncharacterized membrane protein YkvI.
 
    0.782
SDC00022.1
Stage III sporulation protein AE.
  
     0.768
SDB99991.1
Stage III sporulation protein AD.
  
     0.767
SDB87421.1
Sporulation integral membrane protein YlbJ.
  
    0.754
SDB81363.1
Transcriptional regulator.
  
     0.737
SDC55421.1
Transcriptional regulator, AbrB family.
  
  
 0.711
SDB81499.1
Stage II sporulation protein R.
  
     0.696
SDB99892.1
Stage III sporulation protein AA.
  
     0.670
SDC00690.1
SpoIVB peptidase. Serine peptidase. MEROPS family S55.
  
     0.661
Your Current Organism:
Pelagirhabdus alkalitolerans
NCBI taxonomy Id: 1612202
Other names: Amphibacillus sp. S5, CGMCC 1.15177, KCTC 33632, P. alkalitolerans, Pelagirhabdus alkalitolerans Sultanpuram et al. 2016, strain S5
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