STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC45753.1HDIG domain-containing protein. (359 aa)    
Predicted Functional Partners:
SDC30023.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.989
SDB89627.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.977
SDC64434.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.969
SDC58212.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.922
SDB94252.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.904
SDC22807.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.852
SDC41752.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.802
SDB83751.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.798
SDB90655.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.753
SDB90194.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.714
Your Current Organism:
Pelagirhabdus alkalitolerans
NCBI taxonomy Id: 1612202
Other names: Amphibacillus sp. S5, CGMCC 1.15177, KCTC 33632, P. alkalitolerans, Pelagirhabdus alkalitolerans Sultanpuram et al. 2016, strain S5
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