STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK38818.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
SFJ97341.1
Arylsulfatase.
  
     0.592
SFK33663.1
Haloacid dehalogenase-like hydrolase.
  
     0.589
SFK59747.1
Arylsulfatase.
  
     0.587
SFK35592.1
Arylsulfatase.
  
     0.575
SFK59728.1
Phosphoserine phosphatase.
  
     0.560
rlmJ
23S rRNA (adenine2030-N6)-methyltransferase; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.458
SFK68296.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Methylocapsa palsarum
NCBI taxonomy Id: 1612308
Other names: LMG 28715, LMG:28715, M. palsarum, Methylocapsa palsarum Dedysh et al. 2015, Methylocapsa sp. NE2, VKM B-2945, strain NE2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.