STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabDUnannotated protein; Belongs to the aldehyde dehydrogenase family. (460 aa)    
Predicted Functional Partners:
E2P75_05450
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.948
GCA_002119645_01292
Unannotated protein.
  
  
 0.857
E2P74_06440
Unannotated protein.
 
  
 0.840
GCA_002119645_01152
Unannotated protein.
  
 0.838
dhaT
Unannotated protein.
 
 
 0.812
LFER_1853
Unannotated protein.
  
 
 0.574
LFER_1461
Unannotated protein.
  
 
 0.524
frdA
Unannotated protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.507
purA
Unannotated protein; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  
 0.497
treB
Unannotated protein.
  
  
 0.495
Your Current Organism:
Lactobacillus fermentum
NCBI taxonomy Id: 1613
Other names: ATCC 14931, Bacillus casei d, Bacillus d, CCUG 30138, CIP 102980, IFO 15885, L. fermentum, LMG 6902, LMG:6902, Lactobacillus cellobiosus, Lactobacillus sp. NCIM 2165, Lactobacterium fermentum, NBRC 15885, NCCB 46038, NCIMB 11840, NRRL B-4524
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.