Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LFER_523 | gntR | GCA_002119645_00298 | GCA_002119645_00294 | Unannotated protein. | Unannotated protein. | 0.650 |
LFER_523 | nadE | GCA_002119645_00298 | GCA_002119645_00296 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.850 |
LFER_523 | pncB | GCA_002119645_00298 | GCA_002119645_00295 | Unannotated protein. | Unannotated protein; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.763 |
LFER_523 | tex | GCA_002119645_00298 | GCA_002119645_00297 | Unannotated protein. | Unannotated protein. | 0.881 |
cinA | nadD | GCA_002119645_00572 | GCA_002119645_01601 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.971 |
cinA | nadE | GCA_002119645_00572 | GCA_002119645_00296 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.723 |
cinA | pncB | GCA_002119645_00572 | GCA_002119645_00295 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.939 |
cinA | ppnK | GCA_002119645_00572 | GCA_002119645_00648 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.454 |
cinA | ribD | GCA_002119645_00572 | GCA_002119645_00955 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.428 |
cobB | nadD | GCA_002119645_00230 | GCA_002119645_01601 | Unannotated protein. | Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.921 |
cobB | nadE | GCA_002119645_00230 | GCA_002119645_00296 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.918 |
cobB | ppnK | GCA_002119645_00230 | GCA_002119645_00648 | Unannotated protein. | Unannotated protein; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.916 |
gntR | LFER_523 | GCA_002119645_00294 | GCA_002119645_00298 | Unannotated protein. | Unannotated protein. | 0.650 |
gntR | nadE | GCA_002119645_00294 | GCA_002119645_00296 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.668 |
gntR | pncB | GCA_002119645_00294 | GCA_002119645_00295 | Unannotated protein. | Unannotated protein; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.696 |
gntR | tex | GCA_002119645_00294 | GCA_002119645_00297 | Unannotated protein. | Unannotated protein. | 0.652 |
guaA-2 | nadE | GCA_002119645_02056 | GCA_002119645_00296 | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.667 |
guaA-2 | ribD | GCA_002119645_02056 | GCA_002119645_00955 | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.708 |
nadD | cinA | GCA_002119645_01601 | GCA_002119645_00572 | Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | Unannotated protein; Belongs to the CinA family. | 0.971 |
nadD | cobB | GCA_002119645_01601 | GCA_002119645_00230 | Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | Unannotated protein. | 0.921 |
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