STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E2P75_00420Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (391 aa)    
Predicted Functional Partners:
serC
Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 0.999
LFER_32
Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 
0.921
C1Y38_06405
Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 
0.914
gpmA
Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.908
pgm2
Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.908
GCA_002119645_00950
Unannotated protein.
   
   0.525
pgm1
Unannotated protein; Belongs to the phosphoglycerate mutase family.
 
    0.476
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.473
birA
Unannotated protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.454
adhE
Unannotated protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.441
Your Current Organism:
Lactobacillus fermentum
NCBI taxonomy Id: 1613
Other names: ATCC 14931, Bacillus casei d, Bacillus d, CCUG 30138, CIP 102980, IFO 15885, L. fermentum, LMG 6902, LMG:6902, Lactobacillus cellobiosus, Lactobacillus sp. NCIM 2165, Lactobacterium fermentum, NBRC 15885, NCCB 46038, NCIMB 11840, NRRL B-4524
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