STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002119645_01423Unannotated protein. (188 aa)    
Predicted Functional Partners:
LFER_941
Unannotated protein.
  
 
 0.713
yckA
Unannotated protein.
   
   0.581
GCA_002119645_01743
Unannotated protein.
 
  
 0.580
GCA_002119645_01742
Unannotated protein.
 
  
 0.572
GCA_002119645_00830
Unannotated protein.
  
     0.503
GCA_002119645_00111
Unannotated protein.
 
  
 0.501
GCA_002119645_00959
Unannotated protein.
  
     0.451
GCA_002119645_01424
Unannotated protein.
       0.450
tuaA
Unannotated protein.
  
  
 0.447
epsE
Unannotated protein.
  
  
 0.447
Your Current Organism:
Lactobacillus fermentum
NCBI taxonomy Id: 1613
Other names: ATCC 14931, Bacillus casei d, Bacillus d, CCUG 30138, CIP 102980, IFO 15885, L. fermentum, LMG 6902, LMG:6902, Lactobacillus cellobiosus, Lactobacillus sp. NCIM 2165, Lactobacterium fermentum, NBRC 15885, NCCB 46038, NCIMB 11840, NRRL B-4524
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.