STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (58 aa)    
Predicted Functional Partners:
rplT
Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.935
rpmI
Unannotated protein; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.933
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.918
rplS
Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.918
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.918
rpmB
Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.918
rplL
Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.917
rpsB
Unannotated protein; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.917
rpmA
Unannotated protein; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.917
rpmJ
Unannotated protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.917
Your Current Organism:
Lactobacillus fermentum
NCBI taxonomy Id: 1613
Other names: ATCC 14931, Bacillus casei d, Bacillus d, CCUG 30138, CIP 102980, IFO 15885, L. fermentum, LMG 6902, LMG:6902, Lactobacillus cellobiosus, Lactobacillus sp. NCIM 2165, Lactobacterium fermentum, NBRC 15885, NCCB 46038, NCIMB 11840, NRRL B-4524
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.