STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFER_1490Unannotated protein. (239 aa)    
Predicted Functional Partners:
proC
Unannotated protein; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
   0.795
E2P74_07320
Unannotated protein.
  
     0.773
fhuB
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.771
GCA_002119645_01334
Unannotated protein.
  
 
 0.771
LF130101_1457
Unannotated protein.
  
     0.763
C1Y38_07735
Unannotated protein.
  
     0.760
LFER_1488
Unannotated protein.
  
    0.759
dedA
Unannotated protein.
     
 0.747
E2P74_07325
Unannotated protein.
  
     0.747
fhuC
Unannotated protein.
  
 
 0.717
Your Current Organism:
Lactobacillus fermentum
NCBI taxonomy Id: 1613
Other names: ATCC 14931, Bacillus casei d, Bacillus d, CCUG 30138, CIP 102980, IFO 15885, L. fermentum, LMG 6902, LMG:6902, Lactobacillus cellobiosus, Lactobacillus sp. NCIM 2165, Lactobacterium fermentum, NBRC 15885, NCCB 46038, NCIMB 11840, NRRL B-4524
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.