STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT64603.1General stress protein CsbD; Belongs to the UPF0337 (CsbD) family. (64 aa)    
Predicted Functional Partners:
GAT69841.1
CBS domain containing membrane protein.
  
  
 0.752
GAT65085.1
Membrane protein.
  
  
 0.597
GAT69094.1
Acetyltransferase.
  
    0.597
GAT70063.1
Teichoic acid ABC transporter ATP-binding protein.
  
    0.579
GAT64602.1
Phosphoesterase.
  
    0.532
GAT68629.1
Dodecin family protein.
   
    0.515
crgA
Membrane protein; Involved in cell division; Belongs to the CrgA family.
  
     0.511
GAT67130.1
Pyridoxamine 5'-phosphate oxidase.
  
    0.500
GAT67283.1
PPOX class F420-dependent enzyme.
  
    0.500
GAT67284.1
PPOX class F420-dependent enzyme.
  
    0.500
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.