STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT64654.1Transcription antitermination regulator. (244 aa)    
Predicted Functional Partners:
GAT64655.1
Serine phosphatase RsbU regulator of sigma subunit-like protein.
 
     0.731
GAT64697.1
ABC transporter.
  
   0.731
GAT64746.1
Branched-chain amino acid ABC transporter substrate-binding protein.
  
   0.731
GAT65002.1
ABC transporter substrate-binding protein.
  
   0.731
GAT68583.1
Diguanylate phosphodiesterase.
  
     0.574
GAT69864.1
Lantibiotic modifying protein.
  
     0.565
GAT64849.1
Histidine kinase.
  
     0.555
GAT68031.1
uroporphyrin-III C-methyltransferase.
  
 
 0.520
GAT70924.1
Siroheme synthase.
  
 
 0.513
GAT64656.1
Glycosyl transferase.
 
     0.511
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.