STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT64772.1TIGR03085 family protein. (210 aa)    
Predicted Functional Partners:
GAT64954.1
Cystathionine beta-lyase.
 
 0.964
GAT64754.1
Glutamate synthase.
  
 0.925
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.897
GAT68390.1
Elongation factor Tu.
   
 
 0.897
GAT71030.1
NADH dehydrogenase.
  
 
 0.865
GAT66162.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.807
narY
Nitrate reductase subunit beta.
   
 0.787
GAT64496.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.764
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
     
 0.758
GAT67229.1
Iron-sulfur-binding protein.
  
 
 0.751
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.