STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65203.1ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. (402 aa)    
Predicted Functional Partners:
GAT65202.1
Dehydrogenase.
 
     0.946
GAT64549.1
phnB protein.
 
     0.776
GAT66900.1
Transcription initiation protein.
 
     0.776
GAT64550.1
Transcription initiation protein.
 
     0.774
GAT67354.1
Dgpfaetke family protein.
 
     0.765
GAT69878.1
Transcription initiation protein.
 
     0.757
GAT70718.1
DGPFAETKE family protein.
     0.745
GAT67748.1
DGPFAETKE family protein.
     0.743
GAT69805.1
Transcription initiation protein.
 
     0.720
GAT70714.1
Transcription initiation protein.
     0.712
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.