STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65210.1Serine hydrolase. (283 aa)    
Predicted Functional Partners:
GAT65209.1
lysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.604
GAT65211.1
acetoacetyl-CoA synthetase.
       0.451
GAT68310.1
Membrane protein.
  
     0.423
GAT65208.1
Cell division protein FtsI.
     
 0.421
GAT70261.1
XRE family transcriptional regulator.
  
     0.420
GAT70256.1
XRE family transcriptional regulator.
  
     0.407
GAT68467.1
N-acyl-D-glutamate deacylase.
 
     0.403
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.