STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65330.1Peptidase A24. (262 aa)    
Predicted Functional Partners:
GAT65331.1
Type IV pilin PilA.
 
  
 0.947
GAT65332.1
Type II secretion system protein.
 
  
 0.939
GAT65334.1
Type II secretion system protein E.
 
 
 0.917
GAT65329.1
Pilus assembly protein PilM.
 
  
 0.913
GAT65333.1
Twitching motility protein.
 
   
 0.885
GAT66789.1
Beta-lactamase.
  
  
 0.763
GAT65325.1
Hypothetical protein.
  
  
 0.694
GAT65599.1
DNA processing protein DprA.
  
  
 0.692
GAT65327.1
Type IV pilus biogenesis protein PilO.
     
 0.635
GAT65328.1
Fimbrial assembly family protein.
     
 0.617
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.