STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65439.1ABC transporter. (282 aa)    
Predicted Functional Partners:
GAT65440.1
ABC transporter.
 
  0.918
GAT65438.1
Histidine kinase.
 
    0.817
GAT68338.1
Multidrug ABC transporter ATPase.
 
  0.815
GAT65437.1
luxR family transcriptional regulator.
 
     0.811
GAT66245.1
ABC transporter.
 
  
  0.633
GAT65522.1
ABC transporter.
  
  
  0.610
GAT65431.1
Multidrug ABC transporter ATPase.
 
  0.582
GAT65030.1
Multidrug ABC transporter ATPase.
 
  0.571
GAT70428.1
Sulfate ABC transporter ATPase.
 
  0.535
GAT66031.1
Daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein.
 
  0.517
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.