STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65550.1Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (542 aa)    
Predicted Functional Partners:
GAT64954.1
Cystathionine beta-lyase.
   
 
 0.902
GAT65551.1
Glycine/betaine ABC transporter substrate-binding protein.
 
   
 0.878
GAT65565.1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.871
GAT65614.1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.870
GAT65552.1
Glycine/betaine ABC transporter substrate-binding protein.
 
   
 0.811
GAT65553.1
ABC transporter permease.
 
   
 0.781
GAT67123.1
Beta-ketoacyl synthase.
    
 0.762
GAT65554.1
Glycine/betaine ABC transporter ATP-binding protein.
 
   
 0.758
GAT68331.1
Choline dehydrogenase; Belongs to the GMC oxidoreductase family.
  
  
 
0.732
GAT66076.1
Ankyrin repeat-domain-containing protein.
   
 0.669
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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