GAT65574.1 protein (Planomonospora sphaerica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAT65574.1

ABC transporter permease. (259 aa)

Predicted Functional Partners:

GAT65573.1

0.975

GAT65578.1

0.924

GAT67688.1

0.923

GAT69868.1

0.914

GAT69836.1

0.910

GAT65581.1

0.898

GAT65572.1

0.896

GAT68848.1

0.878

GAT65575.1

0.856

GAT69835.1

0.850

Your Current Organism:

Planomonospora sphaerica

NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAT65572.1	GAT65574.1	PS9374_01205	PS9374_01207	Nitrate ABC transporter substrate-binding protein.	ABC transporter permease.	0.896
GAT65572.1	GAT65575.1	PS9374_01205	PS9374_01208	Nitrate ABC transporter substrate-binding protein.	Nitrate ABC transporter permease.	0.905
GAT65572.1	GAT65578.1	PS9374_01205	PS9374_01211	Nitrate ABC transporter substrate-binding protein.	ABC transporter.	0.918
GAT65572.1	GAT67688.1	PS9374_01205	PS9374_03346	Nitrate ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.872
GAT65572.1	GAT69835.1	PS9374_01205	PS9374_05515	Nitrate ABC transporter substrate-binding protein.	ABC transporter permease.	0.905
GAT65572.1	GAT69836.1	PS9374_01205	PS9374_05516	Nitrate ABC transporter substrate-binding protein.	Sulfate ABC transporter ATP-binding protein.	0.881
GAT65572.1	GAT69868.1	PS9374_01205	PS9374_05548	Nitrate ABC transporter substrate-binding protein.	Nitrate ABC transporter ATP-binding protein.	0.842
GAT65573.1	GAT65574.1	PS9374_01206	PS9374_01207	Nitrate ABC transporter substrate-binding protein.	ABC transporter permease.	0.975
GAT65573.1	GAT65575.1	PS9374_01206	PS9374_01208	Nitrate ABC transporter substrate-binding protein.	Nitrate ABC transporter permease.	0.977
GAT65573.1	GAT65578.1	PS9374_01206	PS9374_01211	Nitrate ABC transporter substrate-binding protein.	ABC transporter.	0.920
GAT65573.1	GAT67688.1	PS9374_01206	PS9374_03346	Nitrate ABC transporter substrate-binding protein.	ABC transporter ATP-binding protein.	0.854
GAT65573.1	GAT69835.1	PS9374_01206	PS9374_05515	Nitrate ABC transporter substrate-binding protein.	ABC transporter permease.	0.868
GAT65573.1	GAT69836.1	PS9374_01206	PS9374_05516	Nitrate ABC transporter substrate-binding protein.	Sulfate ABC transporter ATP-binding protein.	0.823
GAT65573.1	GAT69868.1	PS9374_01206	PS9374_05548	Nitrate ABC transporter substrate-binding protein.	Nitrate ABC transporter ATP-binding protein.	0.838
GAT65574.1	GAT65572.1	PS9374_01207	PS9374_01205	ABC transporter permease.	Nitrate ABC transporter substrate-binding protein.	0.896
GAT65574.1	GAT65573.1	PS9374_01207	PS9374_01206	ABC transporter permease.	Nitrate ABC transporter substrate-binding protein.	0.975
GAT65574.1	GAT65575.1	PS9374_01207	PS9374_01208	ABC transporter permease.	Nitrate ABC transporter permease.	0.856
GAT65574.1	GAT65578.1	PS9374_01207	PS9374_01211	ABC transporter permease.	ABC transporter.	0.924
GAT65574.1	GAT65581.1	PS9374_01207	PS9374_01214	ABC transporter permease.	Nitrate ABC transporter substrate-binding protein.	0.898
GAT65574.1	GAT67688.1	PS9374_01207	PS9374_03346	ABC transporter permease.	ABC transporter ATP-binding protein.	0.923