STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65614.1Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (477 aa)    
Predicted Functional Partners:
GAT67123.1
Beta-ketoacyl synthase.
  
 0.901
GAT65550.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 
 0.870
GAT68331.1
Choline dehydrogenase; Belongs to the GMC oxidoreductase family.
 
 
 0.853
GAT64754.1
Glutamate synthase.
  
 
 0.850
GAT67109.1
AMP-dependent synthetase.
  
 0.842
GAT64659.1
Proline dehydrogenase.
 
 0.820
GAT70156.1
Polyketide synthase-like protein.
  
 0.753
GAT65565.1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.712
GAT65616.1
ABC transporter substrate-binding protein.
       0.699
potA
Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.693
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.