STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65718.1Regulator. (161 aa)    
Predicted Functional Partners:
GAT64876.1
XRE family transcriptional regulator.
  
   
 0.791
GAT69737.1
Phosphotransacetylase.
  
     0.761
GAT64945.1
RNA-binding protein.
  
     0.746
GAT68586.1
Transcriptional regulator.
  
     0.693
GAT70331.1
Membrane protein.
  
     0.679
GAT70523.1
Hypothetical protein.
  
     0.679
GAT67981.1
Anti-sigma regulatory factor.
  
     0.678
GAT70179.1
XRE family transcriptional regulator.
  
     0.678
GAT66724.1
Secreted protein.
  
     0.675
GAT67712.1
Anti-sigma factor.
  
     0.664
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.