STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65851.1Membrane protein. (206 aa)    
Predicted Functional Partners:
GAT65850.1
ABC transporter substrate-binding protein.
 
     0.945
GAT65847.1
Tat pathway signal sequence domain protein.
 
    0.740
GAT65852.1
Beta-galactosidase.
 
    0.654
GAT65849.1
Protein lplB.
 
    0.642
GAT65848.1
ABC transporter permease.
 
    0.628
GAT68224.1
Replication protein.
  
     0.538
GAT68126.1
YD repeat-containing protein.
  
    0.529
GAT66895.1
tetR family transcriptional regulator.
  
     0.431
GAT66324.1
DUF4440 domain-containing protein.
  
     0.416
GAT65853.1
Oxidoreductase.
 
     0.403
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: low (34%) [HD]