STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT65867.1Exopolyphosphatase. (585 aa)    
Predicted Functional Partners:
GAT70131.1
Homogentisate 1,2-dioxygenase.
  
 0.924
GAT65865.1
acetyl/propionyl-CoA carboxylase subuit alpha.
 
 
 0.908
GAT65864.1
acetyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.892
GAT67109.1
AMP-dependent synthetase.
    
 0.853
GAT64617.1
methylmalonyl-CoA mutase.
    
 0.840
GAT65866.1
enoyl-CoA hydratase.
  
 
 0.831
GAT66177.1
Pyridoxamine 5'-phosphate oxidase.
 
      0.781
GAT67123.1
Beta-ketoacyl synthase.
  
 
 0.766
GAT66162.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.715
GAT70156.1
Polyketide synthase-like protein.
  
 
 0.669
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.