STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66049.1cdaR family transcriptional regulator. (520 aa)    
Predicted Functional Partners:
ylbF
Carboxylase.
 
     0.871
GAT66052.1
DUF1116 domain-containing protein.
 
     0.867
GAT66051.1
succinyl-CoA synthetase subunit alpha.
 
     0.852
GAT65972.1
Barbiturase; Responsible for the hydrolysis of barbituric acid (2,4,6- trihydroxy-1,3-pyrimidine), an intermediate in the oxidative catabolism of pyrimidines. Catalyzes the hydrolytic opening of the pyrimidine ring of barbituric acid to yield ureidomalonic acid; Belongs to the cyclic amide hydrolase (CyAH) family.
 
     0.761
GAT66024.1
Hydantoinase.
 
     0.724
GAT66044.1
Xanthine dehydrogenase.
 
     0.644
GAT66025.1
5-oxoprolinase.
 
     0.636
GAT66034.1
Carbon monoxide dehydrogenase subunit G.
 
     0.631
GAT66046.1
Molybdopterin dehydrogenase.
 
     0.627
GAT66047.1
Nitrate reductase.
 
    0.542
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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