STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66153.1ABC transporter. (327 aa)    
Predicted Functional Partners:
GAT66154.1
ABC transporter.
 
 0.979
GAT66030.1
Multidrug ABC transporter permease.
 
 0.865
GAT66245.1
ABC transporter.
  
  0.840
GAT69419.1
ABC transporter permease.
 
 0.833
GAT65522.1
ABC transporter.
  
 
  0.776
GAT68473.1
ABC transporter permease.
  
 
  0.763
GAT67688.1
ABC transporter ATP-binding protein.
 
   
 
0.651
GAT64405.1
ABC transporter permease.
   
  0.527
GAT66437.1
Membrane protein.
   
  0.527
GAT68166.1
ABC transporter permease.
   
  0.527
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.