STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66418.1Putative Translation initiation factor IF-2. (145 aa)    
Predicted Functional Partners:
GAT64969.1
Phage-shock protein.
 
  
 0.770
GAT64968.1
F0F1 ATP synthase.
  
     0.684
map-2
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.669
GAT66601.1
Membrane protein.
  
     0.639
GAT68586.1
Transcriptional regulator.
  
     0.603
GAT69191.1
tRNA adenosine deaminase.
  
     0.595
GAT64500.1
Amino acid-binding protein.
  
     0.585
GAT65038.1
Hypothetical protein.
  
     0.563
GAT71228.1
Putative serine-threonine protein kinase.
  
     0.550
GAT65419.1
Putative F0F1-ATPase subunit; ATPase_gene1.
  
     0.537
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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