STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66565.1ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (426 aa)    
Predicted Functional Partners:
GAT66563.1
Heme ABC transporter ATP-binding protein.
 
 0.998
GAT66564.1
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
0.998
GAT66562.1
ABC transporter substrate-binding protein.
 
 
 0.992
GAT71421.1
Basic membrane protein B.
 
 
 0.970
GAT66566.1
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.892
GAT66567.1
Pyrimidine-nucleoside phosphorylase.
 
   
 0.873
GAT67674.1
Sugar ABC transporter ATPase.
  
  0.823
GAT70652.1
Sugar ABC transporter ATP-binding protein.
  
  0.789
GAT66669.1
Xylose ABC transporter ATP-binding protein.
  
  0.691
GAT66561.1
Amidohydrolase.
       0.509
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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