STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66670.1ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (421 aa)    
Predicted Functional Partners:
GAT66668.1
Sugar ABC transporter substrate-binding protein.
 
 0.995
GAT66669.1
Xylose ABC transporter ATP-binding protein.
 
 0.975
GAT70653.1
lacI family transcriptional regulator.
  
 0.960
GAT66689.1
Sugar ABC transporter substrate-binding protein.
 
 0.901
GAT66662.1
ABC transporter permease.
     
  0.900
GAT71123.1
ABC transporter substrate-binding protein.
 
 0.876
GAT70206.1
ABC transporter substrate-binding protein.
 
 0.874
GAT66108.1
Sugar ABC transporter substrate-binding protein.
 
 0.867
GAT70652.1
Sugar ABC transporter ATP-binding protein.
 
 0.862
GAT67674.1
Sugar ABC transporter ATPase.
 
 0.844
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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