STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT66879.1DNA-binding protein. (131 aa)    
Predicted Functional Partners:
GAT66140.1
dUTPase.
  
     0.725
rbpA
Membrane protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
    0.718
GAT70954.1
Aminopeptidase N.
  
     0.699
GAT64811.1
Membrane protein.
  
     0.686
GAT69328.1
Transcriptional regulator.
  
     0.678
GAT66880.1
Competence protein; Belongs to the CinA family.
    
 0.636
GAT66092.1
enoyl-CoA hydratase.
  
     0.628
GAT70531.1
Mycothiol maleylpyruvate isomerase.
  
     0.627
GAT68268.1
DUF3145 domain-containing protein.
  
     0.594
nucS
Endonuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.592
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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