STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67005.1cdaR family transcriptional regulator. (548 aa)    
Predicted Functional Partners:
GAT67004.1
tetR family transcriptional regulator.
       0.671
GAT68533.1
FAD-dependent oxidoreductase.
 
     0.622
GAT67002.1
Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.550
GAT65619.1
FAD-dependent oxidoreductase.
 
     0.539
GAT68589.1
Sulfotransferase.
  
     0.528
GAT68033.1
DNA primase.
  
     0.505
GAT69970.1
pucR family transcriptional regulator.
  
     0.501
GAT70523.1
Hypothetical protein.
  
     0.501
GAT67003.1
Multidrug MFS transporter.
       0.500
GAT64658.1
cdaR family transcriptional regulator.
 
     0.491
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.