STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67136.1acyl-CoA dehydrogenase. (393 aa)    
Predicted Functional Partners:
GAT66101.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.916
GAT67135.1
methionyl-tRNA formyltransferase.
 
     0.867
GAT67161.1
Erythronolide synthase.
 
  0.806
GAT67123.1
Beta-ketoacyl synthase.
  
 0.796
GAT67109.1
AMP-dependent synthetase.
  
 
 0.772
GAT67160.1
4-hydroxybenzoyl-CoA thioesterase.
  
  
  0.770
GAT67162.1
Enediyne biosynthesis protein UnbU.
  
     0.762
GAT67149.1
Alkylhydroperoxidase.
  
     0.761
GAT67163.1
RNA-binding protein.
  
     0.759
GAT67150.1
Glucose-methanol-choline oxidoreductase.
  
     0.729
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.