STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67194.1Carbohydrate ABC transporter. (620 aa)    
Predicted Functional Partners:
GAT69385.1
hlyB/MsbA family ABC transporter.
 
    
0.913
metN
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.891
GAT67195.1
Signal peptidase I.
 
 
  0.891
GAT65562.1
Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.875
GAT68366.1
Peptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 
0.857
GAT67193.1
tlpA-like family protein.
  
    0.774
GAT66681.1
Multidrug ABC transporter ATPase/permease.
 
 
 
0.762
GAT67123.1
Beta-ketoacyl synthase.
  
 0.709
GAT67109.1
AMP-dependent synthetase.
  
 0.703
GAT70156.1
Polyketide synthase-like protein.
  
 0.605
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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