STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67393.1ABC transporter. (482 aa)    
Predicted Functional Partners:
GAT67392.1
ABC transporter permease.
 
 0.994
GAT67390.1
ABC transporter substrate-binding protein.
 
 0.965
GAT67391.1
ABC transporter permease.
 
 
 0.951
GAT71275.1
ABC transporter permease.
 
 0.941
GAT64625.1
Peptide ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.934
GAT64688.1
ABC transporter permease.
 
 0.874
GAT67394.1
Type 12 methyltransferase.
 
   
 0.831
GAT67388.1
Non-ribosomal peptide synthetase.
 
   
 0.815
GAT67389.1
Beta-ketoacyl synthase.
 
     0.811
GAT66997.1
Peptide ABC transporter permease.
 
 0.805
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.