STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67566.1Signal transduction histidine kinase. (528 aa)    
Predicted Functional Partners:
GAT67565.1
Chemotaxis protein CheY.
 0.997
GAT66486.1
Sensory box histidine kinase/response regulator.
 
 
 0.931
GAT67909.1
Transcriptional regulator.
  
 0.884
GAT67568.1
Membrane protein.
 
     0.834
GAT67567.1
C4-dicarboxylate ABC transporter substrate-binding protein.
 
    0.814
GAT67924.1
Histidine kinase.
     
 0.800
GAT70638.1
Histidine kinase.
     
 0.800
GAT67569.1
Tripartite tricarboxylate transporter TctA.
 
     0.793
GAT69096.1
Signal transduction histidine kinase.
  
 
 0.792
GAT71392.1
Signal transduction histidine kinase.
  
 
 0.792
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.