STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67608.1SAM-dependent methyltransferase. (383 aa)    
Predicted Functional Partners:
GAT66225.1
FAD-dependent oxidoreductase; Belongs to the GcvT family.
   
  0.769
GAT67123.1
Beta-ketoacyl synthase.
  
 0.740
gcvP
Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
  0.681
GAT68677.1
Magnesium chelatase.
  
 0.629
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
 0.605
GAT67109.1
AMP-dependent synthetase.
  
 0.589
GAT66122.1
Polynucleotide kinase-phosphatase.
   
   0.580
GAT68893.1
Kinase.
   
   0.580
GAT70480.1
Kinase.
   
   0.580
GAT70659.1
Kinase.
   
   0.580
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.