GAT67730.1 protein (Planomonospora sphaerica)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

GAT67730.1

Anti-sigma factor. (88 aa)

Predicted Functional Partners:

GAT67731.1

0.990

GAT67486.1

0.768

GAT70322.1

0.700

GAT66461.1

0.694

GAT66984.1

0.689

GAT67732.1

0.585

GAT67727.1

0.580

GAT69141.1

0.574

GAT67580.1

0.567

GAT68248.1

0.565

Your Current Organism:

Planomonospora sphaerica

NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAT66461.1	GAT67486.1	PS9374_02111	PS9374_03141	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.712
GAT66461.1	GAT67730.1	PS9374_02111	PS9374_03388	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-sigma factor.	0.694
GAT66461.1	GAT67731.1	PS9374_02111	PS9374_03389	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.816
GAT66984.1	GAT67580.1	PS9374_02636	PS9374_03238	N-acetyltransferase GCN5.	vitamin-B12 independent methionine synthase.	0.748
GAT66984.1	GAT67730.1	PS9374_02636	PS9374_03388	N-acetyltransferase GCN5.	Anti-sigma factor.	0.689
GAT66984.1	GAT68248.1	PS9374_02636	PS9374_03910	N-acetyltransferase GCN5.	DUF3052 domain-containing protein.	0.765
GAT66984.1	GAT70322.1	PS9374_02636	PS9374_06004	N-acetyltransferase GCN5.	Coenzyme F420 biosynthesis-associated protein.	0.508
GAT67486.1	GAT66461.1	PS9374_03141	PS9374_02111	RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.712
GAT67486.1	GAT67730.1	PS9374_03141	PS9374_03388	RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-sigma factor.	0.768
GAT67580.1	GAT66984.1	PS9374_03238	PS9374_02636	vitamin-B12 independent methionine synthase.	N-acetyltransferase GCN5.	0.748
GAT67580.1	GAT67730.1	PS9374_03238	PS9374_03388	vitamin-B12 independent methionine synthase.	Anti-sigma factor.	0.567
GAT67580.1	GAT68248.1	PS9374_03238	PS9374_03910	vitamin-B12 independent methionine synthase.	DUF3052 domain-containing protein.	0.738
GAT67580.1	GAT70322.1	PS9374_03238	PS9374_06004	vitamin-B12 independent methionine synthase.	Coenzyme F420 biosynthesis-associated protein.	0.511
GAT67727.1	GAT67730.1	PS9374_03385	PS9374_03388	Phosphohydrolase.	Anti-sigma factor.	0.580
GAT67727.1	GAT67731.1	PS9374_03385	PS9374_03389	Phosphohydrolase.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.508
GAT67730.1	GAT66461.1	PS9374_03388	PS9374_02111	Anti-sigma factor.	RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.694
GAT67730.1	GAT66984.1	PS9374_03388	PS9374_02636	Anti-sigma factor.	N-acetyltransferase GCN5.	0.689
GAT67730.1	GAT67486.1	PS9374_03388	PS9374_03141	Anti-sigma factor.	RNA polymerase sigma24 factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.768
GAT67730.1	GAT67580.1	PS9374_03388	PS9374_03238	Anti-sigma factor.	vitamin-B12 independent methionine synthase.	0.567
GAT67730.1	GAT67727.1	PS9374_03388	PS9374_03385	Anti-sigma factor.	Phosphohydrolase.	0.580