STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67864.1Haloalkane dehalogenase. (340 aa)    
Predicted Functional Partners:
GAT67109.1
AMP-dependent synthetase.
  
 0.862
GAT67123.1
Beta-ketoacyl synthase.
  
 0.793
GAT67865.1
DNA-directed RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
GAT67665.1
Molecular chaperone GroES.
    
  0.704
GAT67388.1
Non-ribosomal peptide synthetase.
   
 0.641
GAT70672.1
Non-ribosomal peptide synthetase.
   
 0.599
GAT70671.1
Non-ribosomal peptide synthetase.
   
 0.588
GAT69381.1
Alpha/beta hydrolase.
  
     0.579
GAT66059.1
Alcohol dehydrogenase.
    
  0.563
GAT67866.1
lysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.561
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.