STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67972.1Pilus assembly protein CpaF. (396 aa)    
Predicted Functional Partners:
GAT71333.1
Type II secretion system protein.
 
  
 0.906
GAT71336.1
AAA ATPase.
  
 0.904
GAT67973.1
Pilus assembly protein TadB.
  
  
 0.896
GAT71334.1
Type II secretion system protein.
 
  
 0.885
GAT67971.1
Chromosome partitioning protein.
     0.868
GAT67974.1
Secretion system protein.
  
  
 0.844
GAT67975.1
Membrane protein.
     
 0.653
GAT65080.1
Type II secretion system protein.
  
  
 0.511
GAT70216.1
Secretion system protein.
  
  
 0.511
GAT65079.1
Type II secretion system protein.
  
  
 0.491
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.