STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAT67973.1Pilus assembly protein TadB. (244 aa)    
Predicted Functional Partners:
GAT67972.1
Pilus assembly protein CpaF.
  
  
 0.896
GAT67971.1
Chromosome partitioning protein.
 
     0.859
GAT67974.1
Secretion system protein.
     0.841
GAT69146.1
Membrane protein.
  
     0.694
GAT65183.1
Lipoprotein lpqB.
  
     0.676
GAT71333.1
Type II secretion system protein.
  
  
 0.674
GAT67975.1
Membrane protein.
     
 0.667
GAT71336.1
AAA ATPase.
  
  
 0.658
GAT70277.1
Flagellar protein FlgA.
 
  
 0.626
GAT69332.1
Membrane protein.
  
     0.614
Your Current Organism:
Planomonospora sphaerica
NCBI taxonomy Id: 161355
Other names: ATCC 51587, DSM 44632, JCM 9374, NRRL 18923, P. sphaerica, strain A51460
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.